Open Research Data Portal
DOI for Scientific and Technical Data
https://www.doi.org/10.4228/ZALF.DK.155
Title
The effect of cocultivation of Fusarium, Alternaria, and Pseudomonas on the mycotoxin production and growth
Citation
Hoffmann, Annika; Müller, Marina (2020) The effect of cocultivation of Fusarium, Alternaria, and Pseudomonas on the mycotoxin production and growth. Leibniz Centre for Agricultural Landscape Research (ZALF) https://www.doi.org/10.4228/ZALF.DK.155

Citation from DataCite
Creator(s)
Hoffmann, Annika
ORCID: 0000-0002-0966-8600
Affiliation: Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg (Germany), GRID: 433014.1

Müller, Marina
Affiliation: Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg (Germany), GRID: 433014.1
Publisher
Leibniz Centre for Agricultural Landscape Research (ZALF)
Dates
Collected: 2019-03-31/2020-04-11 (YYYY-MM-DD)
PublicationYear
2020
Contributor(s)
Researcher: Müller, Thomas
Researcher: Koch, Mathias
Researcher: Lentzsch, Peter
HostingInstitution: Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg (Germany), GRID: 433014.1
Subject(s)
AGROVOC: Mycotoxins;HPLC;Quantitative analysis;Alternaria;Fusarium;Pseudomonas
Description
Abstract: 
Mycotoxigenic fungal pathogens Fusarium and Alternaria are a leading cause for loss in cereal production. During their growth in wheat-ears, they oppose bacterial antagonists such as Pseudomonas. Studies on these groups’ interactions often neglect the infection process’s temporal aspect and the associated priority effects. Here, we focus on how the first colonizer affects the subsequent ones. In a climatic chamber experiment, wheat-ears were sprayed successively with a pair of the strains A. tenuissima At625, F. graminearum Fg23, or Pseudomonas simiae Ps9. Over three weeks, microbial abundances and mycotoxin concentrations were analyzed and visualized via Self Organizing Map with Sammon Mapping (SOM-SM). All three strains revealed different characteristics and strategies to deal with co-inoculation: Fusarium, as the first colonizer, suppressed the establishment of Alternaria and Pseudomonas. Nevertheless, primary inoculation of Alternaria reduced all of the Fusarium toxins and stopped Pseudomonas from establishing. Pseudomonas showed priority effects in delaying and blocking the production of the fungal mycotoxins. The SOM-SM analysis visualized the competitive strengths: Fg23 ranked first, At625 second, Ps9 third. Our findings of species-specific priority effects in a natural environment and the role of the mycotoxins involved are relevant for developing biocontrol applications.

Methods:
In a climate chamber experiment wheat plants were primarily inoculated with Fusarium/Alternaria or Pseudomonas, after one week an additional isolate different from the first one was applied. In the following third week, the inoculation of the second week was repeated. Before each new inoculation, a part of the previous variety was harvested. All harvested wheat-ears were dried and ground before further analysis (-> qPCR and HPLC).

Funding Reference
Funder: German Research Foundation (DFG)
FunderIdentifier (GRID): 424150.6
AwardNumber: DFG GRK 2118/1
AwardTitle: BioMove Research Training Group
AwardURI: https://www.biomove.org/
Related Identifier
-
Language
English, German
Geolocation
No geolocation (climate chamber experiment)
Data Format
csv
Size
1 table
Type of Resource
Dataset: Table
Structure of Data Table(s)
Column name Unit Description
Sample_ID   Sample_ID: X: first inoculant (1 week after first inoculation) XX:first inoculant + second inoculant (2 week after first inoculation) XXX: first inoculant + second inoculant + third inoculant (3 week after first inoculation) with A (=Alternaria alternata), F (=Fusarium graminearum), P (=Pseudomonas simae) and C (=Control) for X
F_val1 gene copies /g extracted DNA Abundances of the genus Fusarium_ Measurement 1
F_val2 gene copies /g extracted DNA Abundances of the genus Fusarium_ Measurement 2
P_val1 gene copies /g extracted DNA Abundances of Pseudomonas_ Measurement 1
P_val2 gene copies /g extracted DNA Abundances of Pseudomonas_ Measurement 2
A_val1 gene copies /g extracted DNA Abundances of the genus Alternaria_ Measurement 1
A_val2 gene copies /g extracted DNA Abundances of the genus Alternaria_ Measurement 2
DON mg/kg deoxynivalenol measurement
3-Ac-DON mg/kg 3-acetyl deoxynivalenol measurement
15-Ac-DON mg/kg 15-acetyl deoxynivalenol measurement
DON-3G mg/kg deoxynivalenol-3-glucoside measurement
NIV mg/kg nivalenol measurement
ZEN mg/kg zearalenone measurement
ALT mg/kg altenuene measurement
AOH mg/kg alternariol measurement
AME mg/kg alternariol monomethyl ether measurement
TEA mg/kg tenuazonic acid measurement

View Sample Data
Table Rawdata_AntagonTest
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This data by ZALF is licensed under the Creative Commons Attribution 4.0Creative Commons License